Publications

2024

  1. The Rise of Data-Driven Microscopy powered by Machine Learning
    Leonor Morgado, Estibaliz Gómez-de-Mariscal, Hannah S Heil, and 1 more author
    arXiv preprint arXiv:2401.05282 2024
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  2. JDLL: A library to run Deep Learning models on Java bioimage informatics platforms
    Carlos Haro, Stéphane Dallongeville, Thomas Musset, and 6 more authors
    Nature Methods 2024
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2023

  1. DL4MicEverywhere: Deep learning for microscopy made flexible, shareable, and reproducible
    Iván Hidalgo-Cenalmor, Joanna W Pylvänäinen, Mariana G Ferreira, and 6 more authors
    bioRxiv 2023
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  2. Transertion and cell geometry organize the Escherichia coli nucleoid during rapid growth
    Christoph Spahn, Stuart Middlemiss, Estibaliz Gómez-de-Mariscal, and 4 more authors
    bioRxiv 2023
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  3. Live-cell imaging in the deep learning era
    Joanna W Pylvänäinen, Estibaliz Gómez-de-Mariscal, Ricardo Henriques, and 1 more author
    Current Opinion in Cell Biology 2023
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  4. Harnessing Artificial Intelligence To Reduce Phototoxicity in Live Imaging
    Estibaliz Gómez-de-Mariscal, Mario Del Rosario, Joanna W Pylvänäinen, and 2 more authors
    arXiv preprint arXiv:2308.04387 2023
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  5. The Cell Tracking Challenge: 10 years of objective benchmarking
    Martin Maška, Vladimı́r Ulman, Pablo Delgado-Rodriguez, and 8 more authors
    Nature Methods 2023
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  6. Small extracellular vesicles promote stiffness-mediated metastasis
    Alexandra Sneider, Ying Liu, Bartholomew Starich, and 8 more authors
    bioRxiv 2023
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  7. Roadmap on Deep Learning for Microscopy
    Giovanni Volpe, Carolina Wählby, Lei Tian, and 8 more authors
    ArXiv 2023
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2022

  1. MLL1 regulates cytokine-driven cell migration and metastasis
    Praful R Nair, Ludmila Danilova, Estibaliz Gómez-de-Mariscal, and 5 more authors
    bioRxiv 2022
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  2. DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches
    Christoph Spahn, Estibaliz Gómez-de-Mariscal, Romain F Laine, and 8 more authors
    Communications biology 2022
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  3. BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis
    Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez-de-Mariscal, and 8 more authors
    bioRxiv 2022
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2021

  1. Search for temporal cell segmentation robustness in phase-contrast microscopy videos
    Estibaliz Gómez-de-Mariscal, Hasini Jayatilaka, Özgün Çiçek, and 3 more authors
    arXiv preprint arXiv:2112.08817 2021
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  2. DeepImageJ: A user-friendly environment to run deep learning models in ImageJ
    Estibaliz Gómez-de-Mariscal, Carlos Garcı́a-López-de-Haro, Wei Ouyang, and 5 more authors
    Nature Methods 2021
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  3. Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets
    Estibaliz Gómez-de-Mariscal, Vanesa Guerrero, Alexandra Sneider, and 4 more authors
    Scientific reports 2021
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2020

  1. Association of visual and quantitative heterogeneity of 18F-FDG PET images with treatment response in locally advanced rectal cancer: A feasibility study
    Paula Martin-Gonzalez, Estibaliz Gomez Mariscal, M Elena Martino, and 7 more authors
    Plos one 2020
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2019

  1. Deep-learning-based segmentation of small extracellular vesicles in transmission electron microscopy images
    Estibaliz Gómez-de-Mariscal, Martin Maška, Anna Kotrbová, and 3 more authors
    Scientific reports 2019
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2017

  1. Infrared thermography processing to characterize emotional stress: a pilot study
    E Gómez Mariscal, A Munoz-Barrutia, J Frutos, and 2 more authors
    2017